Statistics and data analysis for microarrays using R and Bioconductor

"Richly illustrated in color, Statistics and Data Analysis for Microarrays Using R and Bioconductor, Second Edition provides a clear and rigorous description of powerful analysis techniques and algorithms for mining and interpreting biological information. Omitting tedious details, heavy formalisms, and cryptic notations, the text takes a hands-on, example-based approach that teaches students the basics of R and microarray technology as well as how to choose and apply the proper data analysis tool to specific problems.New to the Second EditionCompletely updated and double the size of its predecessor, this timely second edition replaces the commercial software with the open source R and Bioconductor environments. Fourteen new chapters cover such topics as the basic mechanisms of the cell, reliability and reproducibility issues in DNA microarrays, basic statistics and linear models in R, experiment design, multiple comparisons, quality control, data pre-processing and normalization, Gene Ontology analysis, pathway analysis, and machine learning techniques. Methods are illustrated with toy examples and real data and the R code for all routines is available on an accompanying CD-ROM.With all the necessary prerequisites included, this best-selling book guides students from very basic notions to advanced analysis techniques in R and Bioconductor. The first half of the text presents an overview of microarrays and the statistical elements that form the building blocks of any data analysis. The second half introduces the techniques most commonly used in the analysis of microarray data"-- "Preface Although the industry once suffered from a lack of qualified targets and candidate drugs, lead scientists must now decide where to start amidst the overload of biological data. In our opinion, this phenomenon has shifted the bottleneck in drug discovery from data collection to data anal- ysis, interpretation and integration. Life Science Informatics, UBS Warburg Market Report, 2001 One of the most promising tools available today to researchers in life sciences is the microarray technology. Typically, one DNA array will provide hundreds or thousands of gene expression values. However, the immense potential of this technology can only be realized if many such experiments are done. In order to understand the biological phenomena, expression levels need to be compared between species or between healthy and ill individuals or at different time points for the same individual or

Year

2012

Language

English

Series

Chapman & Hall/CRC mathematical and computational biology

Publisher

CRC Press

Editions

1

Pages

1042

ISBN

9781439809754

Data source: Wikidata